Coggill, P.: search on Z-Library

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1

The challenge of increasing Pfam coverage of the human proteome

Mistry, J., Coggill, P., Eberhardt, R. Y., Deiana, A., Giansanti, A., Finn, R. D., Bateman, A., Punta, M.

Journal:

Year:

2013

Language:

english

File:

PDF, 35 KB

english, 2013

2

The challenge of increasing Pfam coverage of the human proteome

Mistry, J., Coggill, P., Eberhardt, R. Y., Deiana, A., Giansanti, A., Finn, R. D., Bateman, A., Punta, M.

Journal:

Year:

2013

Language:

english

File:

PDF, 499 KB

english, 2013

3

MHC-linked and un-linked class I genes in the wallaby

Hannah V Siddle, Janine E Deakin, Penny Coggill, Elizabeth Hart, Yuanyuan Cheng, Emily SW Wong, Jennifer Harrow, Stephan Beck, Katherine Belov

Journal:

Year:

2009

Language:

english

File:

PDF, 1.37 MB

english, 2009

4

The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein fromStreptococcus pyogenes

Changsoo Chang, Penny Coggill, Alex Bateman, Robert D Finn, Marcin Cymborowski, Zbyszek Otwinowski, Wladek Minor, Lour Volkart, Andrzej Joachimiak

Journal:

BMC Structural Biology

Year:

2009

Language:

english

File:

PDF, 2.91 MB

english, 2009

5

The Pfam protein families database

Finn, R. D., Tate, J., Mistry, J., Coggill, P. C., Sammut, S. J., Hotz, H.-R., Ceric, G., Forslund, K., Eddy, S. R., Sonnhammer, E. L. L., Bateman, A.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 8.69 MB

english, 2007

6

The Pfam protein families database: towards a more sustainable future

Finn, Robert D., Coggill, Penelope, Eberhardt, Ruth Y., Eddy, Sean R., Mistry, Jaina, Mitchell, Alex L., Potter, Simon C., Punta, Marco, Qureshi, Matloob, Sangrador-Vegas, Amaia, Salazar, Gustavo A.,

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 344 KB

english, 2015

7

InterPro in 2011: new developments in the family and domain prediction database

Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T. K., Bateman, A., Bernard, T., Binns, D., Bork, P., Burge, S., de Castro, E., Coggill, P., Corbett, M., Das, U., Daugherty, L., Duquenne,

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 34 KB

english, 2012

8

Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii)

YUANYUAN CHENG, MATTHEW WAKEFIELD, HANNAH V. SIDDLE, PENNY C. COGGILL, CATHY A. HERBERT, STEPHAN BECK, KATHERINE BELOV, MARK D. B. ELDRIDGE

Journal:

Molecular Ecology Resources

Year:

2009

Language:

english

File:

PDF, 71 KB

english, 2009

9

Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis

Eleni M Tomazou, Vardhman K Rakyan, Gregory Lefebvre, Robert Andrews, Peter Ellis, David K Jackson, Cordelia Langford, Matthew D Francis, Liselotte Bäckdahl, Marcos Miretti, Penny Coggill, Diego Ottav

Journal:

BMC Medical Genomics

Year:

2008

Language:

english

File:

PDF, 4.68 MB

english, 2008

10

Two Pfam protein families characterized by a crystal structure of protein lpg2210 fromLegionella pneumophila

Coggill, Penelope, Eberhardt, Ruth Y, Finn, Robert D, Chang, Yuanyuan, Jaroszewski, Lukasz, Godzik, Adam, Das, Debanu, Xu, Qingping, Axelrod, Herbert L, Aravind, L, Murzin, Alexey G, Bateman, Alex

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

11

Identification of the ancestral killer immunoglobulin-like receptor gene in primates

Jennifer G Sambrook, Arman Bashirova, Hanne Andersen, Mike Piatak, George S Vernikos, Penny Coggill, Jeff D Lifson, Mary Carrington, Stephan Beck

Journal:

Year:

2006

Language:

english

File:

PDF, 344 KB

english, 2006

12

Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis

Das, Debanu, Murzin, Alexey G, Rawlings, Neil D, Finn, Robert D, Coggill, Penelope, Bateman, Alex, Godzik, Adam, Aravind, L

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 829 KB

english, 2014

13

InterPro in 2011: new developments in the family and domain prediction database

Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T. K., Bateman, A., Bernard, T., Binns, D., Bork, P., Burge, S., de Castro, E., Coggill, P., Corbett, M., Das, U., Daugherty, L., Duquenne,

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 2.92 MB

english, 2012

14

The YARHG Domain: An Extracellular Domain in Search of a Function

Coggill, Penny, Bateman, Alex, Gires, Olivier

Journal:

Year:

2012

Language:

english

File:

PDF, 3.10 MB

english, 2012

15

Measuring the economic benefit from R&D: results from the mass, length and flow programmes of the UK national measurement system

Jeremy A. Klein, Edward P. Stacey, Christopher J. Coggill, Mick McLean, May I. Sagua

Journal:

Year:

1996

Language:

english

File:

PDF, 940 KB

english, 1996

16

Evolution and comparative analysis of the MHC Class III inflammatory region

Janine E Deakin, Anthony T Papenfuss, Katherine Belov, Joseph GR Cross, Penny Coggill, Sophie Palmer, Sarah Sims, Terence P Speed, Stephan Beck, Jennifer A Marshall Graves

Journal:

Year:

2006

Language:

english

File:

PDF, 839 KB

english, 2006

17

Crystal structures of three representatives of a new Pfam family PF14869 (DUF4488) suggest they function in sugar binding/uptake

Kumar, Abhinav, Punta, Marco, Axelrod, Herbert L., Das, Debanu, Farr, Carol L., Grant, Joanna C., Chiu, Hsiu-Ju, Miller, Mitchell D., Coggill, Penelope C., Klock, Heath E., Elsliger, Marc-André, Deaco

Journal:

Protein Science

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

18

Sequencing and comparative analysis of the gorilla MHC genomic sequence

Wilming, L. G., Hart, E. A., Coggill, P. C., Horton, R., Gilbert, J. G. R., Clee, C., Jones, M., Lloyd, C., Palmer, S., Sims, S., Whitehead, S., Wiley, D., Beck, S., Harrow, J. L.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

19

New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily

Trame, Christine B, Chang, Yuanyuan, Axelrod, Herbert L, Eberhardt, Ruth Y, Coggill, Penelope, Punta, Marco, Rawlings, Neil D

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

20

The Pfam protein families database

Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G., Forslund, K., Holm, L., Sonnhammer, E. L. L., Eddy, S. R., Bateman, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 1.92 MB

english, 2010

21

The tammar wallaby major histocompatibility complex shows evidence of past genomic instability

Hannah V Siddle, Janine E Deakin, Penny Coggill, Laurens Whilming, Jennifer Harrow, Jim Kaufman, Stephan Beck, Katherine Belov

Journal:

Year:

2011

Language:

english

File:

PDF, 1.41 MB

english, 2011

22

Variation analysis and gene annotation of eight MHC haplotypes: The MHC Haplotype Project

Roger Horton, Richard Gibson, Penny Coggill, Marcos Miretti, Richard J. Allcock, Jeff Almeida, Simon Forbes, James G. R. Gilbert, Karen Halls, Jennifer L. Harrow, Elizabeth Hart, Kevin Howe, David K.

Journal:

Year:

2008

Language:

english

File:

PDF, 508 KB

english, 2008

23

Identification of a single killer immunoglobulin-like receptor (KIR) gene in the porcine leukocyte receptor complex on chromosome 6q

Jennifer G. Sambrook, Harminder Sehra, Penny Coggill, Sean Humphray, Sophie Palmer, Sarah Sims, Haru-Hisa Takamatsu, Thomas Wileman, Alan L. Archibald, Stephan Beck

Journal:

Year:

2006

Language:

english

File:

PDF, 390 KB

english, 2006

24

The LRC haplotype project: a resource for killer immunoglobulin-like receptor-linked association studies

R. Horton, P. Coggill, M. M. Miretti, J. G. Sambrook, J. A. Traherne, R. Ward, S. Sims, S. Palmer, H. Sehra, J. Harrow, J. Rogers, M. Carrington, J. Trowsdale, S. Beck

Journal:

Tissue Antigens

Year:

2006

Language:

english

File:

PDF, 176 KB

english, 2006

25

Genetic Analysis of Completely Sequenced Disease-Associated MHC Haplotypes Identifies Shuffling of Segments in Recent Human History

Traherne, James A., Horton, Roger, Roberts, Anne N., Miretti, Marcos M., Hurles, Matthew E., Stewart, C. Andrew, Ashurst, Jennifer L., Atrazhev, Alexey M., Coggill, Penny, Palmer, Sophie, Almeida, Jef

Journal:

Year:

2006

Language:

english

File:

PDF, 499 KB

english, 2006

26

A Common Variant Associated with Dyslexia Reduces Expression of the KIAA0319 Gene

Dennis, Megan Y., Paracchini, Silvia, Scerri, Thomas S., Prokunina-Olsson, Ludmila, Knight, Julian C., Wade-Martins, Richard, Coggill, Penny, Beck, Stephan, Green, Eric D., Monaco, Anthony P., Stubbs,

Journal:

Year:

2009

Language:

english

File:

PDF, 731 KB

english, 2009

27

The genomic sequence and analysis of the swine major histocompatibility complex

C. Renard, E. Hart, H. Sehra, H. Beasley, P. Coggill, K. Howe, J. Harrow, J. Gilbert, S. Sims, J. Rogers, A. Ando, A. Shigenari, T. Shiina, H. Inoko, P. Chardon, S. Beck

Journal:

Year:

2006

Language:

english

File:

PDF, 815 KB

english, 2006

28

The Leukocyte Receptor Complex in Chicken Is Characterized by Massive Expansion and Diversification of Immunoglobulin-Like Loci

Laun, Katja, Coggill, Penny, Palmer, Sophie, Sims, Sarah, Ning, Zemin, Ragoussis, Jiannis, Volpi, Emanuela, Wilson, Natalie, Beck, Stephan, Ziegler, Andreas, Volz, Armin

Journal:

Year:

2006

Language:

english

File:

PDF, 1.64 MB

english, 2006

29

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

Chiang, Z., Vastermark, A., Punta, M., Coggill, P. C., Mistry, J., Finn, R. D., Saier, M. H.

Journal:

Briefings in Bioinformatics

Year:

2015

Language:

english

File:

PDF, 405 KB

english, 2015

30

The Pfam protein families database

Punta, M., Coggill, P. C., Eberhardt, R. Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J., Heger, A., Holm, L., Sonnhammer, E. L. L., Eddy, S. R., Bateman, A.,

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.11 MB

english, 2012

31

Analysis of the genomic region containing the tammar wallaby (Macropus eugenii) orthologues of MHC class III genes

Cross, J.G.R., Harrison, G.A., Coggill, P., Sims, S., Beck, S., Deakin, J.E., Marshall Graves, J.A.

Journal:

Cytogenetic and Genome Research

Year:

2005

Language:

english

File:

PDF, 1.58 MB

english, 2005

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